This module enables interactive visualization of gene expression data from Microarray and RNA-seq experiments from the Gene Expression Omnibus (GEO). The Select a study to compare the expression of single genes across experimental groups as a boxplot, with the conditions on the x-axis and normalized expression levels on the y-axis.
| GSE Accession ID | Title | Organism | Assay | Num Samples | Submission Date | Study Design | PMID | Gene Viewer Link |
|---|---|---|---|---|---|---|---|---|
| GSE179513 | Targeting human langerin promotes HIV-1 specific humoral immune responses | Homo sapiens | Expression profiling by high throughput sequencing | 13 | Jul 06, 2021 |
RNAseq analysis on primary skin LC. Epidermal LC of 6 healthy donors were isolated either at steady state or after 3 days of migration in culture.
|
34324611 | |
| GSE184320 | Loss of skin and mucosal CXCR3+ resident memory T cells causes irreversible tissue-confined immunodeficiency in HIV | Homo sapiens | Expression profiling by high throughput sequencing Other | 15 | Sep 16, 2021 |
For Bulk RNA-seq, we isolated total RNA from skin biopsies and PBMCs. For single cell RNA seq coupled with VDJ DNA Seq, we isolated CD45+ Skin single cells and CD45+ bloos PBMCs.
|
34813775 |
This module was developed by the Ma'ayan Laboratory, and it is funded by NIH grants R01DK131525 and RC2DK131995.