This module enables interactive visualization of gene expression data from Microarray and RNA-seq experiments from the Gene Expression Omnibus (GEO). The Select a study to compare the expression of single genes across experimental groups as a boxplot, with the conditions on the x-axis and normalized expression levels on the y-axis.
| GSE Accession ID | Title | Organism | Assay | Num Samples | Submission Date | Study Design | PMID | Gene Viewer Link |
|---|---|---|---|---|---|---|---|---|
| GSE4755 | torre-affy-human-217240 | Homo sapiens | Expression profiling by array | 3 | May 01, 2006 |
No Study Design
|
N/A |
|
| GSE17440 | Gene Expression in Frontal Cortex in Major Depression and HIV | Homo sapiens | Expression profiling by array | 7 | Jul 30, 2009 |
Retrospective gene expression analysis of autopsy brain tissue. Four HIV/MDD subjects are identified and age-matched HIV patients without neuropsychiatric conditions are compared as controls.
|
20436668 | |
| GSE28160 | Significant Effects of Antiretroviral Therapy on Global Gene Expression in Brain Tissues of Patients with HIV-Associated Neurocognitive Disorders | Homo sapiens | Expression profiling by array | 34 | Mar 24, 2011 |
We performed microarray analysis using Affymetrix Arrays in portmortem brain tissues from seven treated and eight untreated HAND patients and six uninfected controls.
|
21909266 | |
| GSE35864 | The National NeuroAIDS Tissue Consortium Brain Gene Array: Two types of HIV-associated neurocognitive impairment | Homo sapiens | Expression profiling by array | 71 | Feb 16, 2012 |
Twenty-four human subjects in four groups were examined A) Uninfected controls; B) HIV-1 infected subjects with no substantial neurocognitive impairment (NCI); C) Infected with substantial NCI without HIV encephalitis (HIVE); D) Infected with substantial NCI and HIVE. RNA from neocortex, white matter, and neostriatum was processed with the Affymetrix® array platform.
|
23049970 | |
| GSE141756 | Gene expression profiles of active and restricted R/G-HIV+ primary human fetal astrocytes | Homo sapiens | Expression profiling by high throughput sequencing | 11 | Dec 10, 2019 |
Infection of astrocytes with VSVG pseudotyped Red/Green-HIV-1 wildtype and integrase (D116A) mutant. Astrocytes were sorted into latent (R+/G-), active (R+/G+), D116A (R-/G-) and untreated two weeks post-infection. RNA was isolated and sequenced in three separate donors.
|
31896591 |
This module was developed by the Ma'ayan Laboratory, and it is funded by NIH grants R01DK131525 and RC2DK131995.