Submission Date: Mar 07, 2021
Summary: Here we show a newly identified human Innate Lymphoid Cell population present in the follicles of tonsils and lymph nodes termed follicular regulatory ILCs (ILCFR). ILCFR have a distinct phenotype and transcriptional program when compared to other defined ILCs. Surprisingly, ILCFR inhibit the ability of follicular helper T (Tfh) cells to provide B cell help. The localization of ILCFR to the germinal centers suggests these cells may interfere with germinal center B cell (GC-B) and germinal center Tfh cell (GC-Tfh) interactions through the production of transforming growth factor beta (TGF-b). Intriguingly, under conditions of impaired GC-Tfh-GC-B cell interactions, such as human immunodeficiency virus (HIV) infection, the frequency of these cells is increased. Overall, we predict a role for ILCFR in regulating GC-Tfh-GC-B cell interactions and propose they expand in chronic inflammatory conditions.
GEO Accession ID: GSE168407
PMID: 33980982
Select conditions below to toggle them from the plot:
GROUP | CONDITION | SAMPLES |
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tonsil |
GSM5138459 GSM5138466 GSM5138473 GSM5138480 GSM5138487 GSM5138494 GSM5138501
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GSM5138460 GSM5138467 GSM5138474 GSM5138481 GSM5138488 GSM5138495 GSM5138502
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GSM5138456 GSM5138463 GSM5138470 GSM5138477 GSM5138484 GSM5138491 GSM5138498
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GSM5138455 GSM5138462 GSM5138469 GSM5138476 GSM5138483 GSM5138490 GSM5138497
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GSM5138458 GSM5138465 GSM5138472 GSM5138479 GSM5138486 GSM5138493 GSM5138500
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GSM5138454 GSM5138461 GSM5138468 GSM5138475 GSM5138482 GSM5138489 GSM5138496
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GSM5138457 GSM5138464 GSM5138471 GSM5138478 GSM5138485 GSM5138492 GSM5138499
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Submission Date: Mar 07, 2021
Summary: Here we show a newly identified human Innate Lymphoid Cell population present in the follicles of tonsils and lymph nodes termed follicular regulatory ILCs (ILCFR). ILCFR have a distinct phenotype and transcriptional program when compared to other defined ILCs. Surprisingly, ILCFR inhibit the ability of follicular helper T (Tfh) cells to provide B cell help. The localization of ILCFR to the germinal centers suggests these cells may interfere with germinal center B cell (GC-B) and germinal center Tfh cell (GC-Tfh) interactions through the production of transforming growth factor beta (TGF-b). Intriguingly, under conditions of impaired GC-Tfh-GC-B cell interactions, such as human immunodeficiency virus (HIV) infection, the frequency of these cells is increased. Overall, we predict a role for ILCFR in regulating GC-Tfh-GC-B cell interactions and propose they expand in chronic inflammatory conditions.
GEO Accession ID: GSE168407
PMID: 33980982
Control Condition
Perturbation Condition
This pipeline enables you to analyze and visualize your bulk RNA sequencing datasets with an array of downstream analysis and visualization tools. The pipeline includes: PCA analysis, Clustergrammer interactive heatmap, library size analysis, differential gene expression analysis, enrichment analysis, and L1000 small molecule search.