GSE160323: Analyses of Methamphetamine-Exposed and HIV- infected Human Monocyte-Derived Macrophages (hMDM)

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Description

Submission Date: Oct 28, 2020

Summary: Human monocyte-derived macrophages (hMDM) were differentiated in the presence and absence of methamphetamine. Post differentiation, hMDMs were infected with human immunodeficiency virus (HIVADA). To investigate the effects of Meth exposure on infected macrophages day 5 post HIVADA infection, RNA was isolated from HIVADA hMDMs and sequenced using Next Generation Sequencing performed on the Illumina NextSeq550.

GEO Accession ID: GSE160323

PMID: 35175539

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GROUP CONDITION SAMPLES
Elutriated monocytes
GSM4871447 GSM4871450 GSM4871453 GSM4871456 GSM4871459 GSM4871462
GSM4871448 GSM4871451 GSM4871454 GSM4871457 GSM4871460 GSM4871463
GSM4871449 GSM4871452 GSM4871455 GSM4871458 GSM4871461 GSM4871464
Description

Submission Date: Oct 28, 2020

Summary: Human monocyte-derived macrophages (hMDM) were differentiated in the presence and absence of methamphetamine. Post differentiation, hMDMs were infected with human immunodeficiency virus (HIVADA). To investigate the effects of Meth exposure on infected macrophages day 5 post HIVADA infection, RNA was isolated from HIVADA hMDMs and sequenced using Next Generation Sequencing performed on the Illumina NextSeq550.

GEO Accession ID: GSE160323

PMID: 35175539

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Bulk RNA-seq Appyter

This pipeline enables you to analyze and visualize your bulk RNA sequencing datasets with an array of downstream analysis and visualization tools. The pipeline includes: PCA analysis, Clustergrammer interactive heatmap, library size analysis, differential gene expression analysis, enrichment analysis, and L1000 small molecule search.