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HIV Hypothesis Hub (HIVH2)
A platform that facilitates data-driven hypothesis generation for the HIV research community.

Curated datasets containing gene expression in various HIV studies.

Curated Studies Organized by Tissue and Cell Type
Skin IconSkin Blood IconBlood
Kidney IconKidney Dendrite IconDendrite
Abdomen IconAbdomen PBMC IconPBMC
HeLa IconHeLa Tonsil IconTonsil
B Cell IconB Cell Colon IconColon
Cervix IconCervix Adipose IconAdipose
Brain IconBrain Macrophage IconMacrophage
Single Gene Queries
  • In what cells and tissues is my gene expressed?
  • Under what conditions or perturbations is my gene regulated?
  • What are the transcription factors that regulate my gene?
  • Is my gene associated with traits in human GWAS?
  • Is my gene correlated with other genes?
  • Is there a knockout mouse for my gene and does it show any phenotypes?
Gene Set Queries
  • In which annotated gene sets is my gene set enriched?
  • What transcription factors and kinases regulate my gene set?
  • What are the LINCS L1000 small molecules and genetic perturbations that likely up- or down-regulate the expression of my gene set?
Icahn School of Medicine at Mount Sinai Center of Bioinformatics logo
Ma'ayan lab logo
Icahn School of Medicine at Mount Sinai Center of Bioinformatics logo
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